Opposing regulatory functions of positive and negative elements in UASG control transcription of the yeast GAL genes.

  • Finley R
  • Chen S
  • Ma J
  • et al.
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Abstract

The yeast GAL1 and GAL10 genes are transcribed at a remarkably low basal level when galactose is unavailable and are induced by over 4 orders of magnitude when it becomes available. Approximately six negative control elements (designated GAL operators GALO1 to GALO6) are located adjacent to or overlapping four binding sites for the transcription activator GAL4 in the GAL upstream activating sequence UASG. The negative control elements contribute to the broad range of inducibility of GAL1 and GAL10 by inhibiting two GAL4/galactose-independent activating elements (GAE1 and GAE2) in UASG. In turn, multiple GAL4-binding sites in UASG are necessary for GAL4 to overcome repression by the negative control elements under fully inducing conditions. When glucose in addition to galactose is available (repressing conditions), the ability of GAL4 to activate transcription is diminished as a result of its reduced affinity for DNA and the reduced availability of inducer. Under these conditions, the negative control elements inhibit transcriptional activation from the glucose-attenuated GAL4 sites, thus accounting at least in part for glucose repression acting in cis. A normal part of transcriptional regulation of the GAL1 and GAL10 genes, therefore, appears to involve a balance between the opposing functions of positive and negative control elements.

Figures

  • FIG. 1. Plasmids used. (A) pLGA-312 (14), a 2um URA3 plasmid containing a CYCI-lacZ fusion and a unique XhoI site between the CYCI TATA element (T) and the CYCI UAS (UASc). Distances in base pairs from the transcription start site (arrow) to the XhoI site or to the center of UASC are indicated. (B) 121-632 (39), a 2,um URA3 plasmid containing a GALI-lacZ fusion including sequences 128 bp upstream of the GAL] transcription start site (arrow). UASG sequences (including all six GAL operators) further upstream have been deleted and replaced by a unique XhoI site. (C) pJLb, a 2,um URA3 plasmid derived from pLG67OZ (15; see Materials and Methods) containing a UAS-less CYCJ-lacZ fusion with a unique XhoI site 178 bp upstream of the transcriptional start site (arrow) and a unique Sall site 26 bp upstream of the XhoI site.
  • FIG. 2. (A) The GALI-GALIO divergent promoter region between the transcription initiation sites (arrows) of GALIO (left) and GAL] (right), drawn approximately to scale. Positions are indicated by the scale at the top in base pairs (21, 40). Locations of UASG (nomenclature of Guarente et al. [16]), the TATA elements (T), GAL4 sites 1 to 4, GAE1 and GAE2, and GAL operators GALO1 to GALO6 are indicated. (B) Synthetic oligonucleotides used. The sequences of synthetic oligonucleotides along with the regulatory sites from which they are derived are shown. The GALI coding strand of UASG is shown 5' to 3' for each oligonucleotide. The numbers over each sequence refer to positions in UASG. Capital letters denote homology with UASG. GAL4-binding sites are underlined. UASG-41 contains GAL4 sites 1 and 2 in addition to GALO2. All synthetic oligonucleotides and UASG fragments have Sall or XhoI ends (not shown). * UASG-40 containing GALO5 is a restriction fragment from UASG previously described (10).
  • TABLE 1. Repression by GAL operators in single and multiple copy of an upstream UAS
  • TABLE 2. Activation of a UAS-less GAL] promoter by individual GAL4 sites versus GAEs
  • FIG. 3. Repression of upstream activation elements by one or more copies of a GAL operator. P-Galactosidase activities are shown for yeast cells containing pJLb (Fig. 1C) derivative plasmids with the indicated activation elements inserted into the Sail site and with or without the one or more copies of GALO5 (Fig. 2B) inserted into the XhoI site. The activation elements are GAL4 sites 1, 2, and 3 on restriction fragment UASG-75 (10); two or three copies of GAL4 site 3 oligonucleotides (UASG-17b; Fig. 2B); UASH from the HIS4 gene (Materials and Methods); or two copies of a GAE2 oligonucleotide (UASG-37a; Fig. 2B). P-Galactosidase activity was determined in yeast strain YM256 (GAL4+) grown in galactose. Activities below 0.2 U were not determined with accuracy and were assigned the value 0.2 for this figure.
  • TABLE 3. Contribution of GAL operators to glucose repression of GAL4-mediated transcription activation
  • FIG. 4. Regulation of GAL] transcription in the presence and absence of GAL operators. (A) The GALI-JO divergent promoter region, including the 365-bp UASG (nomenclature of Guarente et al. [16]). + and - indicate the locations of positive and negative control regions, respectively. Activating elements GAE1, GAE2, and GAL4-binding sites 1 to 4 are marked by rectangles; GAL operators (O1 to 06) are represented by ovals. T indicates the position of the TATA boxes, arrows show the transcription start sites, and II represents the polymerase II transcription initiation complex. (B) ,-Galactosidase activities from GALI-lacZ fusions (on 2,um URA3 plasmids) in a GAL4+ yeast strain grown on Glu, Glu Gal, Gly, or Gal medium. Wild-type GALI-lacZ fusion includes the intact UASG-365 (plasmid pRY131; Table 1; 40). The data for "operators inactive" are based on data for deletions of GALO3, 05, and 06 (39) and insertion of a UASG fragment containing activating elements into a GALl promoter lacking GAL operators (632-75-1; Table 2).

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Finley, R. L., Chen, S., Ma, J., Byrne, P., & West, R. W. (1990). Opposing regulatory functions of positive and negative elements in UASG control transcription of the yeast GAL genes. Molecular and Cellular Biology, 10(11), 5663–5670. https://doi.org/10.1128/mcb.10.11.5663

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