A 1.6-Mb Microdeletion in chromosome 17q22 leads to NOG-related symphalangism spectrum disorder without intellectual disability

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Abstract

Microdeletions in chromosome 17q22, where the NOG gene resides, have been reported leading to the NOG-related symphalangism spectrum disorder (NOG-SSD), intellectual disability and other developmental abnormalities. In this study we reported a dominant Chinese Han family segregating with typical NOG-SSD symptoms including proximal symphalangism, conductive hearing loss, amblyopia and strabismus, but not intellectual disability. Sanger sequencing identified no pathogenic mutation in the coding regions of candidate genes NOG, GDF5 and FGF9. SNP genotyping in the genomic region surrounding NOG identified loss of heterozygosity in the affected family members. By array comparative genomic hybridization and quantitative real-time polymerase chain reaction, we identified and mapped the breakpoints of a novel 1.6-Mb microdeletion in chromosome 17q22 that included NOG and twelve other genes. It is the first microdeletion reported in chromosome 17q22 that is associated with NOG-SSD only but not with intellectual disability. Our results may help identifying the dosage sensitive genes for intellectual disability and other developmental abnormalities in chromosome 17q22. Our study also suggested that genomic deletions in chromosome 17q22 should be screened in the NOG-SSD patients in which no pathogenic mutation is identified by conventional sequencing methods.

Figures

  • Fig 1. Pedigree, genotype and phenotype characterization of Family F13. A) Pedigree and SNP genotypes of Family F13. The proband F13-2 is pointed by the arrow. SNP genotypes of subjects F13-1, F13-2, F13-6 and F13-7 showed a loss of heterozygosity (in dotted box) in the affected individuals. B) Representative audiograms of subject F13-6. The gaps between the air- (AC) and bone-conducted (BC) hearing thresholds indicate a conductive hearing loss. C) Images and digital radiography of the hands of subject F13-5 showing fusion of the proximal interphalangeal joints at the fifth fingers (arrows).
  • Fig 2. Mapping and identification of the breakpoints of the 1.6-Mbmicrodeletion in Family F13. A) Schematic illustration of the mapping and identification process. The results of array-CGH, quantitative real-time PCR and sequencing across the breakpoints are shown in the top, middle and bottom panels, respectively. B) A 1.2-kb PCR product was amplified from the mutant allele across the breakpoints in the five affected family members F13-2, F13-3, F13-5, F13-6 and F13-7, but not in the unaffected family member F13-4.
  • Fig 3. Comparison of the genes and the genomic intervals deleted by the microdeletions in chromosome 17q22 that are associated withNOG-SSD only (dark gray), ID only (light gray), or bothNOG-SSD and ID (black).Candidate regions for causative genes of ID are shown by the brackets on the top.

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Pang, X., Luo, H., Chai, Y., Wang, X., Sun, L., He, L., … Yang, T. (2015). A 1.6-Mb Microdeletion in chromosome 17q22 leads to NOG-related symphalangism spectrum disorder without intellectual disability. PLoS ONE, 10(3). https://doi.org/10.1371/journal.pone.0120816

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