As single-cell RNA sequencing experiments continue to advance scientific discoveries across biological disciplines, an increasing number of analysis tools and workflows for analyzing the data have been developed. In this chapter, we describe a standard workflow and elaborate on relevant data analysis tools for analyzing single-cell RNA sequencing data. We provide recommendations for the appropriate use of commonly used methods, with code examples and analysis interpretations.
CITATION STYLE
Dong, X., & Bacher, R. (2023). Analysis of Single-Cell RNA-seq Data. In Methods in Molecular Biology (Vol. 2629, pp. 95–114). Humana Press Inc. https://doi.org/10.1007/978-1-0716-2986-4_6
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