Parametrization of 2-thiouracil and 4-thiouracil in CHARMM all-atom empirical force field

  • Sarzyńska J
  • Kuliński T
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Abstract

A new set of force field parameters complementing the CHARMM27 all atom empirical force field for nucleic acids was developed for 2-thiouracil and 4-thiouracil, two naturally modified RNA bases. The new parameters allow for molecular modeling and molecular dynamics simulations of RNA containing 2-thiouracil and 4-thiouracil.

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APA

Sarzyńska, J., & Kuliński, T. (2005). Parametrization of 2-thiouracil and 4-thiouracil in CHARMM all-atom empirical force field. Computational Methods in Science and Technology, 11(1), 49–55. https://doi.org/10.12921/cmst.2005.11.01.49-55

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