Comparative phospho- and acetyl proteomics analysis of posttranslational modifications regulating intestine regeneration in sea cucumbers

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Abstract

Sea cucumbers exposed to stressful circumstances eviscerate most internal organs, and then regenerate them rapidly under favorable environments. Reversible protein phosphorylation and acetylation are major modifications regulating protein function. Herein, for the first time, we perform quantitative phospho- and acetyl proteomics analyses of intestine regeneration in a sea cucumber species Apostichopus japonicus. We identified 1,862 phosphorylation sites in 1,169 proteins, and 712 acetylation sites in 470 proteins. Of the 147 and 251 proteins differentially modified by phosphorylation and acetylation, respectively, most were related to cytoskeleton biogenesis, protein synthesis and modification, signal recognition and transduction, energy production and conversion, or substance transport and metabolism. Phosphorylation appears to play a more important role in signal recognition and transduction than acetylation, while acetylation is of greater importance in posttranslational modification, protein turnover, chaperones; energy production and conversion; amino acid and lipid transport and metabolism. These results expanded our understanding of the regulatory mechanisms of posttranslational modifications in intestine regeneration of sea cucumbers after evisceration.

Figures

  • FIGURE 1 | Outline of the experiment design for phosphorylation and acetylation modification study. Control, the normal intestine in the sea cucumber. 3 dpe, the regenerative intestine at 3 days post evisceration.
  • TABLE 1 | Summary of identified, quantified, and differentially quantified sites and proteins of phosphorylation and acetylation.
  • TABLE 2 | Differentially phosphorylated proteins during intestine regeneration in sea cucumbers.
  • TABLE 2 | Continued
  • TABLE 2 | Continued
  • FIGURE 2 | Enriched gene ontology (GO) analysis of differentially phosphorylated and acetylated proteins (p < 0.05). (A) phosphorylation. (B) Acetylation. Red, GO terms of proteins for which the modification was upregulated. Green, GO terms of proteins for which the modification was downregulated.
  • FIGURE 3 | Protein domain enrichment analysis of differentially phosphorylated and acetylated proteins (p < 0.05). (A) phosphorylation. (B) Acetylation. Red, Protein domain terms for which the modification was upregulated. Green, Protein domain terms for which the modification was downregulated.
  • FIGURE 4 | Enriched pathways analysis of differentially phosphorylated and acetylated proteins (all p < 0.05). (A) phosphorylation. (B) Acetylation. Red, Pathways terms of proteins for which the modification was upregulated. Green, Pathways terms of proteins for which the modification was downregulated.

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Sun, L., Lin, C., Li, X., Xing, L., Huo, D., Sun, J., … Yang, H. (2018). Comparative phospho- and acetyl proteomics analysis of posttranslational modifications regulating intestine regeneration in sea cucumbers. Frontiers in Physiology, 9(JUL). https://doi.org/10.3389/fphys.2018.00836

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