Skip to main content
Journal ArticleOPEN ACCESS

TOUCAN 2: The all-inclusive open source workbench for regulatory sequence analysis

Nucleic Acids Research (2005) 33(SUPPL. 2)
DOI: 10.1093/nar/gki354
116Citations
Citations of this article
100Readers
Mendeley users who have this article in their library.

This article is free to access.

Abstract

We present the second and improved release of the TOUCAN workbench for cis-regulatory sequence analysis. TOUCAN implements and integrates fast state-of-the-art methods and strategies in gene regulation bioinformatics, including algorithms for comparative genomics and for the detection of cis-regulatory modules. This second release of TOUCAN has become open source and thereby carries the potential to evolve rapidly. The main goal of TOUCAN is to allow a user to come to testable hypotheses regarding the regulation of a gene or of a set of co-regulated genes. TOUCAN can be launched from this location: http://www.esat.kuleuven.ac.be/~saerts/software/toucan.php. © 2005 Oxford University Press.

References Powered by Scopus

TRANSFAC: An integrated system for gene expression regulation

Nucleic Acids Research
1059Citations
N/AReaders
Get full text

Human-mouse alignments with BLASTZ.

Genome research
989Citations
N/AReaders
Get full text

Applied bioinformatics for the identification of regulatory elements

Nature Reviews Genetics
917Citations
N/AReaders
Get full text
View more at Scopus

Cited by Powered by Scopus

Integrative analysis reveals selective 9p24.1 amplification, increased PD-1 ligand expression, and further induction via JAK2 in nodular sclerosing Hodgkin lymphoma and primary mediastinal large B-cell lymphoma

Blood
1102Citations
N/AReaders
Get full text

Gene prioritization through genomic data fusion

Nature Biotechnology
749Citations
N/AReaders
Get full text

Constitutive AP-1 activity and EBV infection induce PD-l1 in Hodgkin lymphomas and posttransplant lymphoproliferative disorders: Implications for targeted therapy

Clinical Cancer Research
602Citations
N/AReaders
Get full text
View more at Scopus

Register to see more suggestions

Mendeley helps you to discover research relevant for your work.

Already have an account?

Cite

CITATION STYLE

APA

Aerts, S., Van Loo, P., Thijs, G., Mayer, H., de Martin, R., Moreau, Y., & De Moor, B. (2005). TOUCAN 2: The all-inclusive open source workbench for regulatory sequence analysis. Nucleic Acids Research, 33(SUPPL. 2). https://doi.org/10.1093/nar/gki354

Readers' Seniority

Tooltip

PhD / Post grad / Masters / Doc 40

46%

Researcher 26

30%

Professor / Associate Prof. 18

21%

Lecturer / Post doc 3

3%

Readers' Discipline

Tooltip

Agricultural and Biological Sciences 60

68%

Biochemistry, Genetics and Molecular Bi... 13

15%

Computer Science 10

11%

Medicine and Dentistry 5

6%

Article Metrics

Tooltip
Mentions
References: 1

Save time finding and organizing research with Mendeley

Sign up for free