Caffeine prevents transcription inhibition and P-TEFb/ 7SK dissociation following UV-induced DNA damage

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Abstract

Background: The mechanisms by which DNA damage triggers suppression of transcription of a large number of genes are poorly understood. DNA damage rapidly induces a release of the positive transcription elongation factor b (P-TEFb) from the large inactive multisubunit 7SK snRNP complex. P-TEFb is required for transcription of most class II genes through stimulation of RNA polymerase II elongation and cotranscriptional pre-mRNA processing. Methodology/Principal Findings: We show here that caffeine prevents UV-induced dissociation of P-TEFb as well as transcription inhibition. The caffeine-effect does not involve PI3-kinase-related protein kinases, because inhibition of phosphatidylinositol 3-kinase family members (ATM, ATR and DNA-PK) neither prevents P-TEFb dissociation nor transcription inhibition. Finally, caffeine prevention of transcription inhibition is independent from DNA damage. Conclusion/Significance: Pharmacological prevention of P-TEFb/7SK snRNP dissociation and transcription inhibition following UV-induced DNA damage is correlated. © 2010 Napolitano et al.

Figures

  • Figure 1. Caffeine prevents dissociation of the large inactive P-TEFb complex following UV irradiation. A) HeLa cells were irradiated with UV (40J/m2) and at the indicate times (hours) after irradiation cellular proteins were extracted with different buffers as described in the text, and immunoblotting was performed on low cytosolic extracts (CE) and high-salt nuclear extracts (NE) to detect the percentage of CDK9 and CYCT1 in the
  • Figure 3. Caffeine prevents transcription inhibition independently from DNA damage. 5BCP9F cells were pre-treated (2hr) with caffeine and exposed to UV 40J/m2); after 1 hour of recovery cells were then analyzed by immunofluorescence (A) or immunoblotting (B) with the H2AX and c-H2AX antibodies, as indicated. C) Doxycycline was added to 5BCP9F cells and left for 2 hours. Caffeine was then added to the same doxycycline containing medium and left for additional 2 hours. Cell were fixed 1 hour after UV irradiation and hybridized with fluorescent (Cy3) MS2 DNA probe (MS2, red) and subjected to immunofluorescence with the c-H2AX antibody (green) and stained with DAPI. The merge signals (red vs green) from two different experiments are shown. doi:10.1371/journal.pone.0011245.g003
  • Figure 4. Levels of chromatin bound Pol II and P-TEFb. 5BCP9F cells were treated with doxycycline for 4 hrs to induce expression of Luc gene, then cells were exposed to UV in the presence or absence of caffeine (2 hours pretreatment), after 1 hr of recovery following DNA damage chromatin was prepared and subjected to chromatin immunoprecipitation. Levels of total RNAPII were analyzed by qChIP using the anti-Pol II (8WG16) antibody. Amplicons correspond to sequences upstream of the transcription start site (US 2605), transcription start site (TSS 221) and coding regions CR (+1664) and 39-end (+5411). On the right is reported the ratio of ChIP enrichments relative to TSS amplicon (proximal) and 39-end (distal). In the bottom panel is reported a similar qChIP analysis with anti-CYCT1 antibody. The ACHR promoter amplicon was used as negative control in all experiments. The values reported were calculated as fold percentage of amount of immunoprecipitated DNA relative to that present in total input chromatin. Error bars indicate the standard deviation from the mean (n = 3). doi:10.1371/journal.pone.0011245.g004

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Napolitano, G., Amente, S., Castiglia, V., Gargano, B., Ruda, V., Darzacq, X., … Lania, L. (2010). Caffeine prevents transcription inhibition and P-TEFb/ 7SK dissociation following UV-induced DNA damage. PLoS ONE, 5(6). https://doi.org/10.1371/journal.pone.0011245

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