Conformational analysis of isolated domains of Helicobacter pylori CagA

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Abstract

The CagA protein of Helicobacter pylori is associated with increased virulence and gastric cancer risk. CagA is translocated into the host cell by a H. pylori type IV secretion system via mechanisms that are poorly understood. Translocated CagA interacts with numerous host factors, altering a variety of host signalling pathways. The recently determined crystal structure of C-terminally-truncated CagA indicated the presence of two domains: the smaller, flexible N-terminal domain and the larger, middle domain. In this study, we have investigated the conformation, oligomeric state and stability of the N-terminal, middle and glutamate-proline-isoleucine-tyrosine-alanine (EPIYA)-repeats domains. All three domains are monomeric, suggesting that the multimerisation of CagA observed in infected cells is likely to be mediated not by CagA itself but by its interacting partners. The middle and the C-terminal domains, but not the N-terminal domain, are capable of refolding spontaneously upon heat denaturation, lending support to the hypothesis that unfolded CagA is threaded C-terminus first through the type IV secretion channel with its N-terminal domain, which likely requires interactions with other domains to refold, being threaded last. Our findings also revealed that the C-terminal EPIYA-repeats domain of CagA exists in an intrinsically disordered premolten globule state with regions in PPII conformation - a feature that is shared by many scaffold proteins that bind multiple protein components of signalling pathways. Taken together, these results provide a deeper understanding of the physicochemical properties of CagA that underpin its complex cellular and oncogenic functions. © 2013 Woon et al.

Figures

  • Figure 1. Crystal structure of the CagA region comprising the N-terminal (Domain I) and the middle (Domain II + Domain III) domains [19].
  • Figure 2. SDS-PAGE showing the time-course of digestion of CagA-M by trypsin. The arrow indicates a relatively stable core fragment CagA-Mc. doi: 10.1371/journal.pone.0079367.g002
  • Figure 3. CD spectra of the recombinant CagA fragments. Ellipticity in the far-UV range (200–260 nm) is plotted for (a) CagA-N at 0.075 mg/ml, (b) CagA-M at 0.05 mg/ml, (c) CagA-Mc at 0.1 mg/ml and (d) Cag-R at 0.15 mg/ml. doi: 10.1371/journal.pone.0079367.g003
  • Table 1. Secondary structure content estimated from farUV CD spectra and predicted from sequence analysis or derived from the crystal structure [19,20].
  • Figure 4. SEC and molecular weight (MW) and hydrodynamic radius determination of CagA-N (a), CagAMc (b) and CagA-R (c). Green dots superimposed on the peak indicate the MW as shown on the left-hand y-axis. Red dots represent the hydrodynamic radius calculated over the central portion of the elution peak (shown by UV trace in blue). The hydrodynamic radius values are shown on the right-hand yaxis.
  • Figure 5. Thermal unfolding and refolding transitions of CagA domains monitored by far-UV CD. The unfolding data is shown with black dots for CagA-N (a), CagA-M (b), CagA-Mc (c) and CagA-R (d). Unfolding was reversible for CagA-M, CagA-Mc and CagA-R; the refolding data is shown with open circles. The insets show the corresponding CD spectra for CagA-M (b), CagA-Mc (c) and CagA-R (d) for the native (solid line), unfolded (85 °C, dashed line) and refolded (dotted line) states. The low signal-to-noise ratio for the CagA-R spectrum reflects the fact that the scan for this fragment was performed at lower wavelengths (205 nm rather than 222 nm), where the absorbance is inherently higher and thus the data is collected at a higher dynode voltage.
  • Table 2. Thermodynamic parameters obtained from CD for the unfolding of CagA-M and CagA-Mc (1 kcal = 4.18 kJ).

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APA

Woon, A. P., Tohidpour, A., Alonso, H., Saijo-Hamano, Y., Kwok, T., & Roujeinikova, A. (2013). Conformational analysis of isolated domains of Helicobacter pylori CagA. PLoS ONE, 8(11). https://doi.org/10.1371/journal.pone.0079367

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