Comparative Analysis of Pathogenicity and Phylogenetic Relationship in Magnaporthe grisea Species Complex

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Abstract

Outbreaks of rice blast have been a threat to the global production of rice. Members of the Magnaporthe grisea species complex cause blast disease on a wide range of gramineous hosts, including cultivated rice and other grass species. Recently, based on phylogenetic analyses and mating tests, isolates from crabgrass were separated from the species complex and named M. grisea. Then other isolates from grasses including rice were named as M. oryzae. Here, we collected 103 isolates from 11 different species of grasses in Korea and analyzed their phylogenetic relationships and pathogenicity. Phylogenetic analyses of multilocus sequences and DNA fingerprinting revealed that the haplotypes of most isolates were associated with their hosts. However, six isolates had different haplotypes from the expectation, suggesting potential host shift in nature. Results of pathogenicity tests demonstrated that 42 isolates from crabgrass and 19 isolates from rice and other grasses showed cross-infectivity on rice and crabgrass, respectively. Interestingly, we also found that the isolates from rice had a distinct deletion in the calmodulin that can be used as a probe. © 2013 Choi et al.

Figures

  • Figure 1. The maximum parsimony tree of Mg complex isolates inferred from combined sequences. Labels on the phylogeny are, from left to right: Strain No., host, and the phylogenetic group or species. Sequences used in a previous study [30] were integrated as controls (gray characters). Samples showing inconsistency in haplotypehost origin are indicated in red. The single most parsimonious tree was inferred from 1,563 bp of combined sequence of actin, beta-tubulin, and calmodulin genes including 460 parsimony-informative characters. Bootstrap values, based on 500 replicates, are indicated above the branches. The tree length was 885 steps. The consistency index (CI) and the retention index (RI) were 0.911 and 0.986, respectively. doi:10.1371/journal.pone.0057196.g001
  • Table 1. Hosts of isolates used in this study and their haplotypes inferred from multilocus genealogy.
  • Table 2. Estimates of evolutionary divergence among three phylogenetic species.
  • Figure 2. Genotypes of Mg complex based on hybridization patterns and calmodulin gene sequences. Repetitive sequence (MGR586) was used as a hybridization probe in Southern blotting (left). Multiple hybridizing bands indicate that the isolate originated from rice [19]. ‘Current hosts’ mean hosts that the isolates were collected from. Nucleotide sequences of the calmodulin gene that differentiate all four haplotypes (right). Asterisks indicate conserved nucleotides among the four haplotypes. doi:10.1371/journal.pone.0057196.g002
  • Figure 3. A schematic model for relationship of haplotype-host origin. Cross-infectivity or host shift may cause inconsistency in relationship of haplotype-host origin in the Mg complex. Different haplotypes of the isolates were labeled with different colors in their names, movements, spores, and host plants. Haplotype abbreviation: G–M. grisea, N-Neo group, O–M. oryzae, and O2-M. oryzae from rice. doi:10.1371/journal.pone.0057196.g003
  • Figure 4. Pathogenicity of crabgrass isolates on rice. Pathogenicity assays were performed by spray inoculation (16105 spores/ml). Typical blast lesions were observed on the leaves 10 days after inoculation. doi:10.1371/journal.pone.0057196.g004
  • Table 3. Pathogenicity of Mg complex isolates on rice and crabgrass.
  • Figure 5. Conidial production on blast lesions. A–B. Conidia and conidiophore produced on lesion of rice leaf infected with conidia of the crabgrass isolates (W97-14). C–D. Lesion on crabgrass leaf showing conidia of the isolate from ryegrass (W95-11). doi:10.1371/journal.pone.0057196.g005

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Choi, J., Park, S. Y., Kim, B. R., Roh, J. H., Oh, I. S., Han, S. S., & Lee, Y. H. (2013). Comparative Analysis of Pathogenicity and Phylogenetic Relationship in Magnaporthe grisea Species Complex. PLoS ONE, 8(2). https://doi.org/10.1371/journal.pone.0057196

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