The extended regulatory networks of SXT/R391 integrative and conjugative elements and IncA/C conjugative plasmids

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Abstract

Nowadays, healthcare systems are challenged by a major worldwide drug resistance crisis caused by the massive and rapid dissemination of antibiotic resistance genes and associated emergence of multidrug resistant pathogenic bacteria, in both clinical and environmental settings. Conjugation is the main driving force of gene transfer among microorganisms. This mechanism of horizontal gene transfer mediates the translocation of large DNA fragments between two bacterial cells in direct contact. Integrative and conjugative elements (ICEs) of the SXT/R391 family (SRIs) and IncA/C conjugative plasmids (ACPs) are responsible for the dissemination of a broad spectrum of antibiotic resistance genes among diverse species of Enterobacteriaceae and Vibrionaceae. The biology, diversity, prevalence and distribution of these two families of conjugative elements have been the subject of extensive studies for the past 15 years. Recently, the transcriptional regulators that govern their dissemination through the expression of ICE- or plasmid-encoded transfer genes have been described. Unrelated repressors control the activation of conjugation by preventing the expression of two related master activator complexes in both types of elements, i.e. SetCD in SXT/R391 ICEs and AcaCD in IncA/C plasmids. Finally, in addition to activating ICE- or plasmid-borne genes, these master activators have been shown to specifically activate phylogenetically unrelated mobilizable genomic islands (MGIs) that also disseminate antibiotic resistance genes and other adaptive traits among a plethora of pathogens such as Vibrio cholerae and Salmonella enterica.

Figures

  • FIGURE 1 | Schematic representation of the genetic organization and transcriptional units of the conserved core of SXT/R391 ICEs (integrated in prfC) and pVCR94∆X (circular map linearized at the start position of gene mobI) adapted from Poulin-Laprade et al. (2015) and Carraro et al. (2014a, 2015a). Genes are represented by arrows and color coded according to their function as indicated in the legend. For clarity, ORF names vcrxXXX were shortened as XXX for pVCR94∆X. SetCD- and AcaCD-binding motifs located on positive and negative DNA strands are represented by light green and red narrow boxes, respectively. Operons are indicated by arrows positioned above represented genes. SetCD- and
  • FIGURE 2 | Comparison of the regulatory modules of SXT/R391 ICEs (SRI) and IncA/C plasmids (ACP). The genes are color-coded as indicated in Figure 1 legend. Numbers between the elements represent the percentage of identity between orthologous proteins. The regulation exerted by SetR, Acr1, and Acr2 is indicated (minus sign for repression, plus sign for activation). For clarity, ORF names s0XX were shortened as XX for SRI and vcrxXXX as XXX for ACP.
  • FIGURE 3 | Activation by heteromeric complexes SetCD and AcaCD. (A) Experimentally determined recognition motifs of SetCD and AcaCD (Carraro et al., 2014a; Poulin-Laprade et al., 2015). (B) Representation of SetCD targets in SRIs and in MGIs they mobilize. The arrows indicate transcriptional repression by SetR (minus sign) and transcriptional activation by SetCD (plus signs).
  • FIGURE 4 | Phylogenetic trees based on alignments of amino acid sequences of SetC/AcaC (A) and SetD/AcaD (B) orthologs. The flagellar transcriptional activator proteins FlhC and FlhD of E. coli (Ec) and Serratia marcescens (Sm) were used as outgroups in phylogenetic analyses. Bootstrap values are indicated when over 80%. The individual scale bars represent genetic distances.
  • FIGURE 5 | Comparison of the genetic context of genes coding for SetCD/AcaCD orthologs in diverse mobile genetic elements.

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Poulin-Laprade, D., Carraro, N., & Burrus, V. (2015). The extended regulatory networks of SXT/R391 integrative and conjugative elements and IncA/C conjugative plasmids. Frontiers in Microbiology. Frontiers Research Foundation. https://doi.org/10.3389/fmicb.2015.00837

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